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Ontology

BFO
http://www.ifomis.org/bfo

Relationships in Ontologies
2005
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1175958

The OBO relations Ontology
http://code.google.com/p/obo-relations

NCI Dictionary of Cancer Terms
http://www.cancer.gov/dictionary

Region Connection Calculus
2005
http://mor.nlm.nih.gov/pubs/pres/20050417-Buffalo-MHB.pdf

Mind Informatics
http://www.mindinformatics.org
has project: http://www.stembook.org

Building a domain ontology from glossaries: a general methodology
Loris Bozzato, Mauro Ferrari, and Alberto Trombetta
http://ftp.informatik.rwth-aachen.de/Publications/CEUR-WS/Vol-426/swap2008_submission_26.pdf

Glossary
Commonly used terms in the biomedical sciences
http://www.org.buffalo.edu/rarp/Gloss.html

A problem: Wikipedia’s “Vulture stomach acid” hiperlinks to “Stomach acid”, which refers only to human’s stomach acid.

Affymetrix glossary
http://www.affymetrix.com/support/help/glossary/index.jsp

The Cognitive Neurosciences IV > Index
MIT Press. 2009
http://mitpress.mit.edu/sites/default/files/titles/content/9780262013413_ind_0001.pdf

MIT CogNet
https://cognet.mit.edu

Society for Endocrinology journals (Endocrine-Related Cancer, Journal of Molecular Endocrinology and Journal of Endocrinology)
http://www.endocrinology-journals.org/site/SfE-free-articles-archive/index.xhtml

Ontological commitment
http://en.wikipedia.org/wiki/Ontological_commitment
http://www.britannica.com/EBchecked/topic/1378815/Quines-criterion-of-ontological-commitment

Logic and Ontology
http://plato.stanford.edu/entries/logic-ontology

Ontology (2009)
http://tomgruber.org/writing/ontology-definition-2007.htm

Standard Upper Ontology Working Group (SUO) IEEE P1600.1,
http://suo.ieee.org

http://www.health.gov/paguidelines/guidelines/glossary.aspx

http://householdproducts.nlm.nih.gov/householdGlossary.htm

http://travel.state.gov/content/visas/english/general/glossary.html

Towards automatic classification within the ChEBI ontology
31 July 2009
http://precedings.nature.com/documents/3525/version/1

Multiple ontologies for integrating complex phenotype datasets
05 August 2009
http://precedings.nature.com/documents/3554/version/2

search engines index words inside images: blastodisc
http://www.nature.com/scitable/blog/scholarcast/our_wisdom_of_birds_or

Understanding Medical Terminology
http://ghr.nlm.nih.gov/Resources/medicalterminology

McGraw-Hill Applied Biology Resource Center
http://www.mhhe.com/biosci/abio/glossary.mhtml

figure from “Epigenetic Epidemiology
http://www.nature.com/nrg/journal/v14/n8/full/nrg3405.html

Protein Data Base
http://www.rcsb.org/pdb/home/home.do

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Dec 2014: wordpress seems to be using semantic technologies:
searching for “sampling” produces https://franzcalvo.wordpress.com/2014/06/01/lets-give-statistics-the-attention-it-deserves which doesn’t contain such word

Ontology for People – Vagueness and multiplicity
Keio University Press Inc. 2008
http://www-kasm.nii.ac.jp/papers/takeda/08/takeda08io.pdf
http://abelard.flet.keio.ac.jp/ontology/index.php?InterOntology08

Franz Calvo, John H. Gennari: Interoperability of Protege 2.0 beta and OilEd 3.5 in the Domain Knowledge of Osteoporosis. EON 2003.

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